您好，欢迎访问山东省农业科学院文献资源数据库平台

Transcriptome analysis of rosette and folding leaves in Chinese high-throughput RNA sequencing

文献类型： 外文期刊

作者： Wang, Fengde 1 ; Li, Libin 1 ; Li, Huayin 1 ; Liu, Lifeng 1 ; Zhang, Yihui 1 ; Gao, Jianwei 1 ; Wang, Xiaowu 2 ;

作者机构： 1.Shandong Acad Agr Sci, Inst Vegetables, Shandong Key Lab Greenhouse Vegetable Biol, Shandong Branch Natl Vegetable Improvement Ctr, Jinan 250100, Peoples R China

2.Chinese Acad Agr Sci, Inst Vegetables & Flower

关键词： Chinese cabbage;Rosette leaves;Folding leaves;Transcriptome;High-throughput RNA sequencing

期刊名称：GENOMICS （ 影响因子：5.736； 五年影响因子：4.939 ）

ISSN： 0888-7543

年卷期： 2012 年 99 卷 5 期

页码：

收录情况： SCI

摘要： In this study, we report the first use of RNA-sequencing to gain insight into the wide range of transcriptional events that are associated with leafy head development in Chinese cabbage. We generated 53.5 million sequence reads (90 bp in length) from the rosette and heading leaves. The sequence reads were aligned to the recently sequenced Chiifu genome and were analyzed to measure the gene expression levels, to detect alternative splicing events and novel transcripts, to determine the expression of single nucleotide polymorphism.;, and to refine the annotated gene structures. The analysis of the global gene expression pattern suggests two important concepts, which govern leafy head formation. Firstly, some stimuli, such as carbohydrate levels, light intensity and endogenous hormones might play a critical role in regulating the leafy head formation. Secondly, the regulation of transcription factors, protein kinases and calcium may also be involved in this developmental process. (C) 2012 Published by Elsevier Inc.

  • 相关文献

[1]MicroRNA expression analysis of rosette and folding leaves in Chinese cabbage using high-throughput Solexa sequencing. Wang, Fengde,Li, Huayin,Zhang, Yihui,Li, Jingjuan,Li, Libin,Liu, Lifeng,Wang, Lihua,Wang, Cuihua,Gao, Jianwei.

[2]Genome-wide identification and analysis of the growth-regulating factor family in Chinese cabbage (Brassica rapa L. ssp pekinensis). Wang, Fengde,Ding, Qian,Li, Jingjuan,Zhang, Yihui,Li, Huayin,Gao, Jianwei,Qiu, Nianwei. 2014

[3]Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp Pekinensis). Zhang, Gaoyuan,Zhang, Jiannong,Wang, Fengde,Li, Jingjuan,Ding, Qian,Zhang, Yihui,Li, Huayin,Gao, Jianwei. 2015

[4]High-throughput sequencing discovery of conserved and novel microRNAs in Chinese cabbage (Brassica rapa L. ssp pekinensis). Wang, Fengde,Li, Libin,Liu, Lifeng,Li, Huayin,Zhang, Yihui,Gao, Jianwei,Yao, Yingyin,Ni, Zhongfu. 2012

[5]PHYSIOLOGICAL AND BIOCHEMICAL PROPERTIES ANALYSIS OF LATE-BOLTING TRANSGENIC CHINESE CABBAGE (BRASSICA RAPA L. SSP PEKINENSIS). Xia, G.,He, Q.,Zhao, S.. 2015

[6]Inheritance and development of EST-SSR marker associated with turnip mosaic virus resistance in Chinese cabbage. Li, Qiaoyun,Zhang, Zhigang,Zhao, Zhizhong,Li, Qiaoyun,Zhang, Zhigang,Zhao, Zhizhong,Li, Qiaoyun,Zhang, Zhigang,Zhao, Zhizhong,Tong, Haishen,Song, Xiyun. 2011

[7]Ectopic expression of a phytochrome B gene from Chinese cabbage (Brassica rapa L. ssp pekinensis) in Arabidopsis thaliana promotes seedling de-etiolation, dwarfing in mature plants, and delayed flowering. Song, Mei-Fang,Shang, Hong-Zhong,Gu, Hai-Ke,Song, Mei-Fang,Zhang, Shu,Li, Jing-Juan,Gao, Jian-Wei,Song, Mei-Fang,Hou, Pei,Guo, Lin,Su, Liang,Yang, Jian-Ping,Xiao, Yang.

[8]Physiological and Transcriptomic Responses of Chinese Cabbage (Brassica rapa L. ssp Pekinensis) to Salt Stress. Qiu, Nianwei,Li, Jingjuan,Zhang, Yihui,Wang, Fengde,Gao, Jianwei,Qiu, Nianwei,Liu, Qian. 2017

[9]High level resistance to Turnip mosaic virus in Chinese cabbage (Brassica campestris ssp pekinensis (Lour) Olsson) transformed with the antisense NIb gene using marker-free Agrobacterium tumefaciens infiltration. Yu Zhandong,Zhao Shuangyi,He Qiwei.

[10]Identification and mapping of a novel Turnip mosaic virus resistance gene TuRBCS01 in Chinese cabbage (Brassica rapa L.). Li, Qiaoyun,Zhang, Zhigang,Liu, Shuantao,Wang, Shufen,Liu, Xianxian,Xu, Wenling,Fu, Weimin,Zhao, Zhizhong,Zhang, Xiaoliang,Zeng, Qiang,Pei, Yuhe,Song, Xiyun.

[11]Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish. Wang, Shufen,He, Qiwei,Liu, Xianxian,Xu, Wenling,Li, Libin,Gao, Jianwei,Wang, Fengde,Wang, Xiufeng. 2012

[12]Transcriptome Analysis of Calcium and Hormone-Related Gene Expressions during Different Stages of Peanut Pod Development. Li, Yan,Meng, Jingjing,Yang, Sha,Guo, Feng,Zhang, Jialei,Geng, Yun,Cui, Li,Li, Xinguo,Wan, Shubo. 2017

[13]Transcriptome profiling of peanut gynophores revealed global reprogramming of gene expression during early pod development in darkness. Xia, Han,Zhao, Chuanzhi,Hou, Lei,Li, Aiqin,Zhao, Shuzhen,Bi, Yuping,An, Jing,Wan, Shubo,Wang, Xingjun,Bi, Yuping,Wan, Shubo,Wang, Xingjun,Bi, Yuping,An, Jing,Zhao, Yanxiu,Wang, Xingjun. 2013

[14]Switch on a more efficient pyruvate synthesis pathway based on transcriptome analysis and metabolic evolution. Yang, Maohua,Mu, Tingzhen,Xing, Jianmin,Chen, Ruonan,Zhang, Xiang. 2017

[15]Transcriptomic Analysis of the Porcine Endometrium during Embryo Implantation. Lin, Haichao,Wang, Huaizhong,Wang, Yanping,Liu, Chang,Wang, Cheng,Guo, Jianfeng,Lin, Haichao,Wang, Yanping,Liu, Chang,Guo, Jianfeng. 2015

[16]Comparative Transcriptome Analysis to Reveal Genes Involved in Wheat Hybrid Necrosis. Cheng, Yan,Guo, Jiahui,Zheng, Xuelian,Deng, Kejun,Zhou, Jianping,Yang, Ennian,Liu, Cheng. 2014

[17]Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs. Wang, Yuding,Ma, Cai,Sun, Yi,Kang, Li,Jiang, Yunliang,Wang, Yuding,Li, Yi. 2017

[18]Molecular Link between Leaf Coloration and Gene Expression of Flavonoid and Carotenoid Biosynthesis in Camellia sinensis Cultivar 'Huangjinya'. Song, Lubin,Yao, Yuantao,Tao, Jihan,Ma, Qingping,Sun, Kang,Kaleri, Najeeb A.,Li, Xinghui,Zou, Zhongwei. 2017

[19]The antioxidative defense system is involved in the premature senescence in transgenic tobacco (Nicotiana tabacum NC89). Liu, Yu,Wang, Lu,Liu, Heng,Zhao, Rongrong,Liu, Bin,Zhang, Yuanhu,Fu, Quanjuan. 2016

[20]Differential gene expression and associated QTL mapping for cotton yield based on a cDNA-AFLP transcriptome map in an immortalized F-2. Liu, Renzhong,Wang, Baohua,Guo, Wangzhen,Zhang, Tianzhen,Liu, Renzhong,Wang, Liguo.

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：山东省农业科学院文献资源数据库平台

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台