Genome-Wide Identification, Expression Analysis and Functional Study of DELLA Genes in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)
文献类型: 外文期刊
作者: Yuan, Yongxue 1 ; Wang, Lixia 1 ; Zhao, Qianyu 3 ; Liu, Chenwen 1 ; Fu, Xin 1 ; Li, Xiaolong 1 ; Qiu, Minghui 1 ; Li, Jingjuan 1 ; Zhang, Yihui 1 ; Li, Cheng 1 ; Qiu, Nianwei 2 ; Wang, Fengde 1 ; Gao, Jianwei 1 ;
作者机构: 1.Shandong Acad Agr Sci, Inst Vegetables, Natl Vegetable Improvement Ctr, Shandong Branch, Jinan 250131, Shandong, Peoples R China
2.Qufu Normal Univ, Coll Life Sci, Qufu 273165, Shandong, Peoples R China
3.Chinese Acad Sci, Shanghai Inst Plant Physiol & Ecol, Shanghai 200032, Peoples R China
4.Shandong Agr Univ, Hort Sci & Engn, Tai An 271002, Shandong, Peoples R China
5.Shandong Normal Univ, Coll Life Sci, Jinan 250014, Shandong, Peoples R China
关键词: Brassica rapa; DELLA protein; evolution; stress tolerance; growth and development
期刊名称:FRONTIERS IN BIOSCIENCE-LANDMARK ( 影响因子:3.1; 五年影响因子:3.9 )
ISSN: 2768-6701
年卷期: 2024 年 29 卷 5 期
页码:
收录情况: SCI
摘要: Background: DELLA protein is a crucial factor which played pivotal roles in regulating numerous intriguing biological processes in plant development and abiotic stress responses. However, little is known about the function and information of DELLA protein in Chinese cabbage. Methods: Using 5 DELLA gene sequences in Arabidopsis Thaliana as probes, 5 DELLA genes in Chinese cabbage were identified by Blast search in Chinese cabbage database (Brassica database (BRAD)). The National Center for Biotechnology Information (NCBI), ExPaSy, SWISS-MODEL, DNAMAN, MEGA 11, PlantCARE were used to identify and analyze the DELLA gene family of Chinese cabbage. Gene expression was analyzed by quantitative real-time polymerase chain reaction (qRT-PCR). The function of BraA10gRGL3 was verified by overexpression and phenotypic analysis of BraA10gRGL3 and yeast hybrid. Results: In this study, 5 BraDELLAs homologous to Arabidopsis thaliana were identified and cloned based on the Brassica database, namely, BraA02gRGL1, BraA05gRGL2, BraA10gRGL3, BraA06gRGA and BraA09gRGA. All BraDELLAs contain the DELLA, TVHYNP, and GRAS conserved domains. Cis-element analysis revealed that the promoter regions of these 5 DELLA genes all contain light-responsive elements, TCT motif, I-box, G-box, and box 4, which are associated with GA signaling. Transcriptome analysis results proved that the expression of BraA02gRGL1, BraA05gRGL2, and BraA10gRGL3 in Y2 at different growth stages were lower than them in Y7, which is consistent with the phenotype that Y7 exhibited stronger stress tolerance than Y2. It is worth emphasizing that even through the overexpression of BraA10gRGL3-Y7 in Arabidopsis resulted in smaller leaf size and lower fresh weight compared to the wild type (WT) Arabidopsis: Columbia, a stronger response to abiotic stresses was observed in BraA10gRGL3-Y7. It indicated that BraA10gRGL3-Y7 can improve the stress resistance of plants by inhibiting their growth. Moreover, the yeast two-hybrid experiment confirmed that BraA10gRGL3-Y7 can interacted with BraA05gGID1a-Y7, BraA04gGID1b1, BraA09gGID1b3-Y2, and BraA06gGID1c, whereas BraA10gRGL3-Y2 cannot interact with any BraGID1. Conclusions: Collectively, BraDELLAs play important role in plant development and response to abiotic stress. The differences in amino acid sequences between BraA10gRGL3-Y2 and BraA10gRGL3-Y7 may result in variations in their protein binding sites, thus affecting their interaction with the BraGID1 family proteins. This systematic analysis lays the foundation for further study of the functional characteristics of DELLA genes of Chinese cabbage.
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