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MicroRNA expression analysis of rosette and folding leaves in Chinese cabbage using high-throughput Solexa sequencing

文献类型： 外文期刊

作者： Wang, Fengde 1 ; Li, Huayin 1 ; Zhang, Yihui 1 ; Li, Jingjuan 1 ; Li, Libin 1 ; Liu, Lifeng 2 ; Wang, Lihua; Wang, Cui 1 ;

作者机构： 1.Shandong Acad Agr Sci, Inst Vegetables & Flowers, Shandong Key Lab Greenhouse Vegetable Biol, Shandong Branch,Natl Vegetable Improvement Ctr, Jinan 250100, Peoples R China

2.Shandong Acad Agr Sci, Inst Vegetables & Flowers, Shandong Key Lab Greenhouse Vegetable Biol, Shandong Branch,Natl Vegetable Improvement Ctr, Jinan 250100, Peo

关键词： Chinese cabbage;Folding leaves;High-throughput Solexa sequencing;MicroRNA;Rosette leaves

期刊名称：GENE （ 影响因子：3.688； 五年影响因子：3.329 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： In this study, a global analysis of miRNA expression from rosette leaves (RLs) and folding leaves (FLs) of Chinese cabbage (Brassica rapa L. ssp. pekinensis) was conducted using high-throughput Solexa sequencing. In total, over 12million clean reads were obtained from each library. Sequence analysis identified 64 conserved miRNA families in each leaf type and 104 and 95 novel miRNAs from RLs and FLs, respectively. Among these, 61 conserved miRNAs and 61 novel miRNAs were detected in both types of leaves. Furthermore, six conserved and 21 novel miRNAs were differentially expressed between the two libraries. Target gene annotation suggested that these differentially expressed miRNAs targeted transcription factors, F-box proteins, auxin and Ca2+ signaling pathway proteins, protein kinases and other proteins that may function in governing leafy head formation. This study advanced our understanding of the important roles of miRNAs in regulating leafy head development in Chinese cabbage.

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