您好，欢迎访问山东省农业科学院文献资源数据库平台

Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication

文献类型： 外文期刊

作者： Sun, Xuepeng 1 ; Jiao, Chen 1 ; Schwaninger, Heidi 2 ; Chao, C. Thomas 2 ; Ma, Yumin 3 ; Duan, Naibin 3 ; Khan, Awais; 1 ;

作者机构： 1.Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA

2.ARS, USDA, Plant Genet Resources Unit, Geneva, NY 14456 USA

3.Shandong Acad Agr Sci, Shandong Ctr Crop Germplasm Resources, Jinan, Shandong, Peoples R China

4.Cornell Univ, Plant Pathol & Plant Microbe Biol Sect, Sch Integrat Plant Sci, Geneva, NY USA

5.Cornell Univ, Sch Integrat Plant Sci, Hort Sect, New York State Agr Expt Stn, Geneva, NY USA

6.Cornell Univ, Sch Integrat Plant Sci, Hort Sect, Ithaca, NY USA

7.ARS, USDA, Robert w Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA

期刊名称：NATURE GENETICS （ 影响因子：38.33； 五年影响因子：36.431 ）

ISSN： 1061-4036

年卷期：

页码：

收录情况： SCI

摘要： Domestication of the apple was mainly driven by interspecific hybridization. In the present study, we report the haplotype-resolved genomes of the cultivated apple (Malus domestica cv. Gala) and its two major wild progenitors, M. sieversii and M. sylvestris. Substantial variations are identified between the two haplotypes of each genome. Inference of genome ancestry identifies similar to 23% of the Gala genome as of hybrid origin. Deep sequencing of 91 accessions identifies selective sweeps in cultivated apples that originated from either of the two progenitors and are associated with important domestication traits. Construction and analyses of apple pan-genomes uncover thousands of new genes, with hundreds of them being selected from one of the progenitors and largely fixed in cultivated apples, revealing that introgression of new genes/alleles is a hallmark of apple domestication through hybridization. Finally, transcriptome profiles of Gala fruits at 13 developmental stages unravel similar to 19% of genes displaying allele-specific expression, including many associated with fruit quality.

  • 相关文献
作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：山东省农业科学院文献资源数据库平台

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台