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Unravelling the novel sex determination genotype with 'ZY' and a distinctive 2.15-2.95 Mb inversion among poplar species through haplotype-resolved genome assembly and comparative genomics analysis

文献类型： 外文期刊

作者： Li, Juan 1 ; Chen, Tingting 1 ; Gao, Kai 1 ; Xue, Yinxuan 1 ; Wu, Ruqian 1 ; Guo, Bin 1 ; Chen, Zhong 1 ; Li, Shanwen 6 ; Zhang, Ren-Gang 7 ; Jia, Kai-Hua 8 ; Mao, Jian-Feng 9 ; An, Xinmin 1 ;

作者机构： 1.Beijing Forestry Univ, Coll Biol Sci & Technol, Beijing Adv Innovat Ctr Tree Breeding Mol Design, Natl Engn Res Ctr Tree Breeding & Ecol Restorat,St, Beijing 100083, Peoples R China

2.Shanxi Normal Univ, Coll Life Sci, Taiyuan, Peoples R China

3.Chinese Acad Forestry, Res Inst Subtrop Forestry, Fuyang, Hangzhou, Peoples R China

4.Shanxi Acad Forestry & Grassland Sci, Taiyuan, Peoples R China

5.Beijing Forestry Univ, Coll Forestry, Key Lab Silviculture & Conservat, Minist Educ, Beijing, Peoples R China

6.Shandong Acad Forestry, Jinan, Peoples R China

7.Chinese Acad Sci, Kunming Inst Bot, Yunnan Key Lab Integrat Conservat Plant Species Ex, Key Lab Plant Divers & Biogeog East Asia, Kunming, Peoples R China

8.Shandong Acad Agr Sci, Inst Crop Germplasm Resources, Key Lab Crop Genet Improvement & Ecol & Physiol, Jinan, Peoples R China

9.Umea Univ, Umea Plant Sci Ctr, Dept Plant Physiol, SE-90187 Umea, Sweden

关键词： chromosome structural variations; haplotype-resolved genome assembly; interspecific hybrid; parental origin; Populus tomentosa; sex determination

期刊名称：MOLECULAR ECOLOGY RESOURCES （ 影响因子：5.5； 五年影响因子：7.8 ）

ISSN： 1755-098X

年卷期： 2024 年

页码：

收录情况： SCI

摘要： Populus tomentosa, an indigenous tree species, is widely distributed and cultivated over 1,000,000 km2 in China, contributing significantly to forest production, ecological conservation and urban-rural greening. Although a reference genome is available for P. tomentosa, the intricate interspecific hybrid origins, chromosome structural variations (SVs) and sex determination mechanisms remain confusion and unclear due to its broad and even overlapping geographical distribution, extensive morphological variations and cross infiltration among white poplar species. We conducted a haplotype-resolved de novo assembly of P. tomentosa elite individual GM107, which comprises subgenomes a and b with a total genome size of 714.9 Mb. We then analysed the formation of hybrid species and the phylogenetic evolution and sex differentiation across the entire genus. Phylogenomic analyses suggested that GM107 likely originated from a hybridisation event between P. alba (female) and P. davidiana (male) approximately 3.8 Mya. A total of 1551 chromosome SVs were identified between the two subgenomes. More noteworthily, a distinctive inversion structure spanning 2.15-2.95 Mb was unveiled among Populus, Tacamahaca, Turaga, Aigeiros poplar species and Salix, highlighting a unique evolutionary feature. Intriguingly, a novel sex genotype of the ZY type, which represents a crossover between XY and ZW systems, was identified and confirmed through both natural and artificial hybrids populations. These novel insights offer significant theoretical value for the study of the species' evolutionary origins and serve as a valuable resource for ecological genetics and forest biotechnology.

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