Genome-Wide Analysis of Snf2 Gene Family Reveals Potential Role in Regulation of Spike Development in Barley
文献类型： 外文期刊
作者： Chen, Gang 1 ; Mishina, Kohei 1 ; Zhu, Hongjing 1 ; Kikuchi, Shinji 2 ; Sassa, Hidenori 2 ; Oono, Youko 1 ; Komatsuda, Takao 1 ;
作者机构： 1.Natl Agr & Food Res Org NARO, Inst Crop Sci, 2-1-2 Kannondai, Tsukuba 3058602, Japan
2.Chiba Univ, Grad Sch Hort, 648 Matsudo, Matsudo 2718510, Japan
3.Shandong Acad Agr Sci, Crop Res Inst, Natl Engn Res Ctr Wheat & Maize, Shandong Technol Innovat Ctr Wheat, Jinan 252100, Peoples R China
关键词： Hordeum vulgare; ATP-dependent chromatin remodeling; evolution; expression analysis; spike development
期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.6； 五年影响因子：6.2 ）
ISSN：
年卷期： 2023 年 24 卷 1 期
页码：
收录情况： SCI
摘要： Sucrose nonfermenting 2 (Snf2) family proteins, as the catalytic core of ATP-dependent chromatin remodeling complexes, play important roles in nuclear processes as diverse as DNA replication, transcriptional regulation, and DNA repair and recombination. The Snf2 gene family has been characterized in several plant species; some of its members regulate flower development in Arabidopsis. However, little is known about the members of the family in barley (Hordeum vulgare). Here, 38 Snf2 genes unevenly distributed among seven chromosomes were identified from the barley (cv. Morex) genome. Phylogenetic analysis categorized them into 18 subfamilies. They contained combinations of 21 domains and consisted of 3 to 34 exons. Evolution analysis revealed that segmental duplication contributed predominantly to the expansion of the family in barley, and the duplicated gene pairs have undergone purifying selection. About eight hundred Snf2 family genes were identified from 20 barley accessions, ranging from 38 to 41 genes in each. Most of these genes were subjected to purification selection during barley domestication. Most were expressed abundantly during spike development. This study provides a comprehensive characterization of barley Snf2 family members, which should help to improve our understanding of their potential regulatory roles in barley spike development.
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