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GenBank中花生栽培种基因组DNA及EST序列的SNP分析

文献类型: 中文期刊

作者: 唐月异 1 ; 张建成 1 ; 王秀贞 1 ; 崔凤高 1 ; 王传堂 1 ;

作者机构: 1.山东省花生研究所

关键词: 花生;SNP;频率;GenBank

期刊名称: 花生学报

ISSN: 1002-4093

年卷期: 2010 年 39 卷 02 期

页码: 21-23

摘要: 下载GenBank数据库中已公布的花生栽培种基因组DNA序列1718条及EST序列85797条,利用DNAStar软件进行叠连群构建,基因组DNA序列构建叠连群161个,长度共计152940bp,直接鉴定出候选SNP位点5496个,SNP平均出现频率为3.59%;EST序列构建10990个叠连群,长度共计10477241bp,由三条及三条序列以上构成的叠连群的总长度为6524329bp,发现候选SNP位点307179个,SNP平均出现频率为4.71%。

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