Genome diversity and highland-adaptative variation in Tibet barley landrace population of China
文献类型: 外文期刊
作者: Dondup, Dawa 1 ; Yang, Yang 3 ; Xu, Dongdong 4 ; Namgyal, Lhundrup 1 ; Wang, Zihao 6 ; Shen, Xia 7 ; Dorji, Tsechoe 8 ; Kyi, Nyima 10 ; Drolma, Lhakpa 11 ; Gao, Liyun 1 ; Ga, Zhuo 1 ; Sang, Zha 1 ; Ga, Zhuo 1 ; Mu, Wang 1 ; Zhuoma, Pubu 1 ; Taba, Xiongnu 1 ; Jiao, Guocheng 1 ; Liao, Wenhua 1 ; Tang, Yawei 1 ; Zeng, Xingquan 1 ; Luobu, Zhaxi 1 ; Wu, Yufeng 7 ; Wang, Chunchao 4 ; Zhang, Jing 4 ; Qi, Zengjun 7 ; Guo, Weilong 6 ; Guo, Ganggang 4 ;
作者机构: 1.Tibet Acad Agr & Anim Husb Sci, Res Inst Agr, State Key Lab Hulless Barley & Yak Germplasm Resou, Lhasa, Peoples R China
2.Tibet Agr & Husb Univ, Coll Plant Sci, Linzhi, Peoples R China
3.Zaozhuang Univ, Coll Life Sci, Zaozhuang, Peoples R China
4.Chinese Acad Agr Sci ICS CAAS, Inst Crop Sci, Key Lab Grain Crop Genet Resources Evaluat & Utili, Natl Key Facil Crop Gene Resources & Genet Improve, Beijing, Peoples R China
5.Shandong Acad Agr Sci, Inst Ind Crops, Jinan, Peoples R China
6.China Agr Univ, Frontiers Sci Ctr Mol Design Breeding, Beijing, Peoples R China
7.Nanjing Agr Univ, State Key Lab Crop Genet & Germplasm Enhancement, Nanjing, Peoples R China
8.Chinese Acad Sci, Inst Tibetan Plateau Res, Key Lab Alpine Ecol & Biodivers, Beijing, Peoples R China
9.Chinese Acad Sci, Ctr Excellence Tibetan Plateau Earth Sci, Beijing, Peoples R China
10.Tibet Meteorol Bur, Tibet Climate Ctr, Lhasa, Peoples R China
11.Tibet Meteorol Bur, Tibet Inst Plateau Atmospher & Environm Sci, Lhasa, Peoples R China
12.Tibet Meteorol Bur, Key Lab Atmospher Environm Tibet Autonomous Reg, Lhasa, Peoples R China
关键词: highland adaptation; naked barley; tGBS; vernalization genes; grain color
期刊名称:FRONTIERS IN PLANT SCIENCE ( 影响因子:5.6; 五年影响因子:6.8 )
ISSN: 1664-462X
年卷期: 2023 年 14 卷
页码:
收录情况: SCI
摘要: Barley landraces accumulated variation in adapting to extreme highland environments during long-term domestication in Tibet, but little is known about their population structure and genomic selection traces. In this study, tGBS (tunable genotyping by sequencing) sequencing, molecular marker and phenotypic analyses were conducted on 1,308 highland and 58 inland barley landraces in China. The accessions were divided into six sub-populations and clearly distinguished most six-rowed, naked barley accessions (Qingke in Tibet) from inland barley. Genome-wide differentiation was observed in all five sub-populations of Qingke and inland barley accessions. High genetic differentiation in the pericentric regions of chromosomes 2H and 3H contributed to formation of five types of Qingke. Ten haplotypes of the pericentric regions of 2H, 3H, 6H and 7H were further identified as associated with ecological diversification of these sub-populations. There was genetic exchange between eastern and western Qingke but they shared the same progenitor. The identification of 20 inland barley types indicated multiple origins of Qingke in Tibet. The distribution of the five types of Qingke corresponded to specific environments. Two predominant highland-adaptative variations were identified for low temperature tolerance and grain color. Our results provide new insights into the origin, genome differentiation, population structure and highland adaptation in highland barley which will benefit both germplasm enhancement and breeding of naked barley.
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