Comparative transcriptome analysis of four co-occurring Ulva species for understanding the dominance of Ulva prolifera in the Yellow Sea green tides
文献类型: 外文期刊
作者: Wang, Yu 1 ; Liu, Feng 2 ; Liu, Xingfeng 1 ; Shi, Shitao 1 ; Bi, Yuping 1 ; Moejes, Fiona Wanjiku 6 ;
作者机构: 1.Shandong Univ, Sch Life Sci, Jinan 250100, Shandong, Peoples R China
2.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China
3.Pilot Natl Lab Marine Sci & Technol Qingdao, Marine Ecol & Environm Sci Lab, Qingdao 266237, Shandong, Peoples R China
4.Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266400, Shandong, Peoples R China
5.Shandong Acad Agr Sci, Biotechnol Res Ctr, Jinan 250100, Shandong, Peoples R China
6.Bantry Marine Res Stn Ltd, Bantry P75 AX07, Cork, Ireland
关键词: Transcriptome; Ulva prolifera; Chlorophyta; Green tide; Yellow Sea; Bloom
期刊名称:JOURNAL OF APPLIED PHYCOLOGY ( 影响因子:3.215; 五年影响因子:3.612 )
ISSN: 0921-8971
年卷期: 2019 年 31 卷 5 期
页码:
收录情况: SCI
摘要: The last 12 years has seen the dominance of Ulva prolifera in the green tides occurring in the Yellow Sea. To gain a better understanding of the underlying molecular clues associated with the dominance pattern of the Yellow Sea green tides, we generated and compared the transcriptomes of four co-occurring Ulva species including U. prolifera, U. linza, U. flexuosa, and U. compressa under the same conditions. Our results revealed that the transcriptomes of four Ulva species shared a set of core genes, but varied in construction of GO term categories, transcription factor (TF) styles, and metabolism pathways. Based on the KEGG database, several growth-related genes including pyruvate kinase (PK) and nitrate transporter (NRT) have been identified to be enriched in U. prolifera compared with the other three Ulva species. This study provides novel transcriptionomic data for us to understand the species dominance pattern in the Yellow Sea green tides.
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