文献类型： 外文期刊
作者： Chen, You-Yi 1 ; Li, Chung-, I 2 ; Hsiao, Yu-Yun 3 ; Ho, Sau-Yee 4 ; Zhang, Zhe-Bin 4 ; Liao, Chien-Chi 4 ; Lee, Bing-Ru 4 ; Lin, Shao-Ting 1 ; Wu, Wan-Lin 1 ; Wang, Jeen-Shing 4 ; Zhang, Diyang 5 ; Liu, Ke-Wei 7 ; Liu, Ding-Kun 5 ; Zhao, Xue-Wei 5 ; Li, Yuan-Yuan 5 ; Ke, Shi-Jie 5 ; Zhou, Zhuang 5 ; Huang, Ming-Zhong 5 ; Wu, Yong-Shu 9 ; Peng, Dong-Hui 5 ; Lan, Si-Ren 5 ; Chen, Hong-Hwa 3 ; Liu, Zhong-Jian 5 ; Wu, Wei-Sheng 4 ; Tsai, Wen-Chieh 1 ;
作者机构： 1.Natl Cheng Kung Univ, Inst Trop Plant Sci & Microbiol, Tainan 701, Taiwan
2.Natl Cheng Kung Univ, Dept Stat, Tainan 701, Taiwan
3.Natl Cheng Kung Univ, Orchid Res & Dev Ctr, Tainan 701, Taiwan
4.Natl Cheng Kung Univ, Dept Elect Engn, Tainan 701, Taiwan
5.Natl Cheng Kung Univ, Dept Electri cal Engn, Key Lab Natl Forestry & Grassland Adm Orchid Conse, Tainan 701, Taiwan
6.Fujian Agr & Forestry Univ, Coll Landscape Architecture, Int Orchid Res Ctr, Fuzhou 350002, Fujian, Peoples R China
7.Tsinghua Univ, Tsinghua Berkeley Shenzhen Inst TBSI, Inst Biopharmaceut & Hlth Engn iBHE, Ctr Biotechnol & Biomed,Shenzhen Int Grad Sch,Stat, Shenzhen 518055, Peoples R China
8.Zhejiang Inst Subtrop Crops, Zhejiang Acad Agr Sci, Wenzhou 325005, Peoples R China
9.Fujian Agr & Forestry Univ, Educ Bot Garden, Fuzhou 350002, Fujian, Peoples R China
10.Shandong Acad Agr Sci, Dept Life Sci, Jinan 701, Peoples R China
关键词： Orchid; OrchidBase; Whole-genome sequences; Orchidoideae; Platanthera; Synteny; Gene order; miRNA
期刊名称：BMC PLANT BIOLOGY （ 影响因子：5.3； 五年影响因子：5.9 ）
ISSN： 1471-2229
年卷期： 2022 年 22 卷 1 期
页码：
收录情况： SCI
摘要： Containing the largest number of species, the orchid family provides not only materials for studying plant evolution and environmental adaptation, but economically and culturally important ornamental plants for human society. Previously, we collected genome and transcriptome information of Dendrobium catenatum, Phalaenopsis equestris, and Apostasia shenzhenica which belong to two different subfamilies of Orchidaceae, and developed user-friendly tools to explore the orchid genetic sequences in the OrchidBase 4.0. The OrchidBase 4.0 offers the opportunity for plant science community to compare orchid genomes and transcriptomes and retrieve orchid sequences for further study. In the year 2022, two whole-genome sequences of Orchidoideae species, Platanthera zijinensis and Platanthera guangdongensis, were de novo sequenced, assembled and analyzed. In addition, systemic transcriptomes from these two species were also established. Therefore, we included these datasets to develop the new version of OrchidBase 5.0. In addition, three new functions including synteny, gene order, and miRNA information were also developed for orchid genome comparisons and miRNA characterization. OrchidBase 5.0 extended the genetic information to three orchid subfamilies (including five orchid species) and provided new tools for orchid researchers to analyze orchid genomes and transcriptomes. The online resources can be accessed at
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