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Genome-wide analysis of the RING finger gene family in apple

文献类型： 外文期刊

作者： Li, Yanze 1 ; Wu, Bingjiang 1 ; Yu, Yanli 2 ; Yang, Guodong 1 ; Wu, Changai 1 ; Zheng, Chengchao 1 ;

作者机构： 1.Shandong Agr Univ, Coll Life Sci, State Key Lab Crop Biol, Tai An 271018, Shandong, Peoples R China

2.Shandong Acad Agr Sci, Natl Maize Improvement Subctr, Maize Inst, Jinan 250100, Peoples R China

关键词： proteins;RING finger protein;metal ligands;RING-H2;RING-HC;RING-C2;RING-v;RING-D;RING-S/T;RING-G;RING-mH2;RING-mHC;plant growth;fruit development;plant development;abiotic stress;biotic stress;whole genome sequence

期刊名称：MOLECULAR GENETICS AND GENOMICS （ 影响因子：3.291； 五年影响因子：3.257 ）

ISSN：

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收录情况： SCI

摘要： The RING finger protein family plays a crucial role in plant growth and development and in response to biotic and abiotic stresses. However, no detailed information concerning this family is available for apple (Malus x domestica L. Borkh) due to the limited information on whole genome sequences. In this study, 688 RING domains in 663 predicted proteins were identified in apple. Based on the spacing between metal ligands or substitutions at one or more of the metal ligand positions, nine RING types were identified: RING-H2, RING-HC, RING-C2, RING-v, RING-D, RING-S/T, RING-G, RING-mH2, and RING-mHC, in which the first seven types were described previously in Arabidopsis, while the latter two were newly identified in apple. Proteins containing RING finger motifs were further classified into 57 groups according to the different known or unknown domains outside the RING domains. A total of 643 retrieved proteins appear to be distributed over all 17 linkage groups with different densities. Microarray and expressed sequence tag data revealed that only a few of these RING finger proteins may be involved in fruit development. As a first step towards genome-wide analyses of the RING-containing genes in apple, our results provide valuable information for understanding the classification and putative functions of the RING finger gene family in higher plants.

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